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The gut microbiome (microbial community inhabiting the gut) plays a vital role in host health, being involved in many physiological processes.

During pregnancy, humans and animals experience a range of changes in their bodily processes such as the immune and endocrine systems. These changes are strongly associated with fluctuations in the gut microbiome composition.

However, findings have varied regarding the types and relative abundances of microbiota during pregnancy.

Since diet is known to be a key factor shaping the gut microbiome, the study authors questioned how the diet may impact microbiome data in pregnant rats and their offspring.

In a new study by Hasebe et al., female rats were fed a diet of either:

  • High-fat, high-sugar ‘Cafeteria’ food (nutrient-poor and highly processed)
  • Chow (complete and balanced food)

Gut microbiota composition was examined in mothers pre-pregnancy, across gestation and at lactation, as well as in the offspring at weaning (3 weeks) and at 14 weeks old (on Chow diet).

At the end of lactation, the maternal metabolic state, plasma folate and B12 status were measured. Faecal samples were collected at each timepoint and the faecal (gut microbiome) DNA was extracted.

The Ramaciotti Centre performed 16S (V4 region) amplicon library preparation and sequencing on an Illumina MiSeq (2 x 250 bp).

This study found that

  • The high-fat & high-sugar diet caused metabolic disturbances in the mothers (increased weight gain, adiposity, glucose and plasma leptin; lower folate and B12 levels).
  • The maternal diet affects the microbiota composition across pregnancy:
    • differences in the alpha diversity
    • differences in the abundances of Bacteroidetes and Firmicutes varied between Caf vs Chow diets, but only Chow rats experienced a significant effect of time.
  • There are associations between maternal plasma folate and B12 levels and the maternal gut microbiota 
  • The maternal microbiota influences the offspring microbiota
  • … plus more!

For the full details of this study, access the publication .

Hasebe, K., Kendig, M. D., Kaakoush, N. O., Tajaddini, A., Hesam-Shariati, S., Westbrook, R. F., & Morris, M. J. (2025). Pregnancy-related changes in microbiome are disrupted by obesogenic diet exposure: implications for offspring microbiome development. Food & Function.